| Acc. |
TCSH51628 |
| Internal Acc. |
|
| Type |
TC/Unigene
|
| Annotation (Top 5 hits in Uniprot_trembl) |
3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Solanum tuberosum E-value=0; 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Nicotiana sylvestris E-value=0; 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 OS=Capsicum annuum E-value=0; 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 OS=Solanum tuberosum E-value=0; 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 OS=Solanum lycopersicum E-value=0; |
| Length |
2371 nt |
| Species |
Solanum habrochaites |
| Belonged EST Libraries |
LIBEST_025268 (31 ESTs); LH__Ea (19 ESTs); SRR027941 (15 ESTs); SRR027940 (1 ESTs); |
| Sequence |
AAAGAGAAAAGAGAATCATATACAAAAGCAGAGTAAATATTAAAATGGCATTACACTCCC
TAAATTACAAACAATACAAGAGAAAAGATGGATCATCTTCGTTGGCAAGTGCTGAGAAGA
GAGTAAATTACAAGTTTAACCCCCACTGGACACTGGTAACTTTTCCACCTAACATCATCA
GAGATGTTCACTAAATATAATATTTGCAGAAACAAAGAGACCCTACACCCTCACATGGCT
TCATAGAAAAAATACATACAACACATTCCAACTTGTTCTTGAATATTCCCCACATTATTA
TTAATTGATGAACAAAGAAGATCTTTAATTTATTACTTTATATTATAATTTTGGTACTTC
TTCTTCTGCAGCTAGATCTCCCTAATTCTGAAAATTTTATTGCTATTCTTTCTTTTTATT
GGAATATAGAAATAGTAGTAGGGGGGGCTAATTAATCCTCACAGTGACTAAGAGGAATTG
ATTACTTGGGAAATATCTTTGATAGATCTATTATATTTCATGTGACTTTTAACTAGTTGG
CCAGCAGAGATAGCTGACATGAGAGATAGCTCACCAGCTAGTACAGAACCAGCTACTATT
GTGGCCAAGAGTCTTGCGTTTGAACCTGGTGCATCTCTATTTGCACCTTTAACTCCTAGC
AAGTTCAAGCAAGCTGACTGTGATGCAAGTTGAGTTCCACCACCTACGGTACCAACCTCA
ATAGAAGGCATAGTTACTGAAATATGGAGGTCTTTGCCATCATTTACAGCCTCCATCATA
GTAATGCAGTGAGAGCTCTCAACATTTTGAGCAGGGTCTTGGCCAGTGGCCAAATATACA
GCAGAGACGATGTTGCTGGCATGAGCATTGAAGCCACCGAGGGCACCAGCCATGGCTGAC
CCAGTAAGGTTTTTAAGCATGTTCAGCTCCACAAGAGCAGCAACCTCAGTTTTCAACACT
TTCTTCACTACATCCTCCTTGATTATTGCCTCGCAAACTACTGATTTTCCTCTACCTTCA
ATCCAGTTAACTGCTGCTGGCTTCTTATCCGAACAAAAGTTCCCAGATATGCCAATGACG
TCCATGTCTGGATATTCACTCTGAAGGTAATCCAGAACGTTCTGGACACCTTTGGATACC
ATGTTCATTCCCATTGCATCACCAGTGCTACAACTAAATCTCATATACAGATTTTTACCA
GCTATAGCACATTGAATGCCCTGTAATCGAGCAAATCTGCTTGATTTGTTGAACATAAGA
GAAAGAATCTCAAAGTTAAGGGGATCCTCAACGAAGAATTTCAACTCAGCGGCTCTTTTG
GCGGTGGTGAACCGGACAACCGGAGCTCTTGTCATCCCATCTCTGAGCAAAATGCTGTTG
GCACCACCAGAGACAAAGATAGCCTTGCAACCCCTGTTGGTGCTAGCAACTAAACATCCT
TCTGTAGTTGCCATTGGCACTGAGTACTCTCTCCCATCAAGCAACAAAGGCCCTGCAATA
CCAACCGGTATTTGCAAAAGTCCTACAGGCATCTCACAGCACTGTCCAAGAATAGACTCA
TAGTCAAATCCTTCCAATGGGAGCCCTTCCAATGACTTCCCTGTAATCCTCTGTAACGCC
TCTTTTCGAATCGAAGCAGCTCTCATACAATCACCAAGCTTTGATTCCAAAGAATATGAT
GGTGTTTTACCCTGAACAACAGATTGTATTATCTCCTCGTCATCTTCCGATAATGCTGGC
ATGATTATTGGCGCAGGCTTCTCCGTTTGGGACAAAGCTGCCTTGGCAGGTTGCTGTGGA
ACCATTGGGGCAATTTTTCGAACAGGTGGTGGAGGCACAACGCAGCCAAGAGTAGTTGCA
GCAGCACATGGTCCCCGGCGGCTATCTTCCTCAATAATTAGCTGCTCAGCATTCTCATCC
TCAATATCCCATGAATCACTATTCGACCTGGACACAAACGACTGAACAAACCCAATCCCA
AAGAAACCCAATAGATATATAACGGAAGCAATCAATGACACCATAGCTAACAATTCAGAA
AGGGTAACCACGTGAAGAGGAATAGAATTACGGATCTTCTCACGCCACCTTACGAGAAGA
AAATACATAACAGAGAAAAACATGGTGAAAAACAACCCATTGGTTAGGTACAATGGGAGT
GGAAGCGCATCAGATGCTTTAGGAGAAGAAACTTGATGTTGTTTCAGAGGTTCGCCGGCG
GAAGCATCTTTTGATGTGCATAAAGGCTTAACAGGTCGCCGGCGAACGTCCATTGTAAAA
TTTAGTTGATTTTCCGGCAGGAACACCGGCTTTTTGAAAAAGAAAAAAAAAGAGAAATGA
GAGAAAGAGAGAAAGTCAATTGTATATTAAG
|
| EST members of Unigene |
DN168081 DN167693 GT180786 DN168463 DN168462 GT176196 DN168082 SRR027940.124137 SRR027941.303145 DN171952 GT177746 GT180411 GT182899 SRR027941.317533 SRR027941.134435 GT177722 SRR027941.15861 GT170099 GT172578 SRR027941.66797 GT177766 DN170545 GT169666 SRR027941.220008 SRR027941.38566 DN170546 GT180747 GT177695 SRR027941.126794 GT172625 GT180560 SRR027941.156391 SRR027941.146275 GT170049 GT171833 GT173670 GT178128 GT182952 GT174379 GT174435 DN171251 DN171252 GT174411 GT170426 SRR027941.54292 DN168195 GT183395 GT180516 DN170076 GT170379 SRR027941.104773 DN170425 SRR027941.96876 DN170426 DN170427 SRR027941.141530 GT182912 DN168700 DN168701 GT176245 DN171615 GT182939 DN171614 GT174358 SRR027941.223943 GT181094
|
| InterProScan Domain |
|
| Gene Ontology |
|
| KEGG Orthology |
Metabolism > Lipid Metabolism > ko00100 Biosynthesis of steroids > K00021 3-hydroxy-3-methylglutaryl-CoA reductase |
| EC |
1.1.1.34 |
| Transcription Factor Family |
|
| Transporter Classification Family |
2.A.6 Resistance-nodulation-cell division factor superfamily RND |
| Probeset |
|
| Corresponding NCBI Gene |
843982
|
| Trichome-related Gene from Literature |
843982
|