| Acc. |
TCSL76287 |
| Internal Acc. |
|
| Type |
TC/Unigene
|
| Annotation (Top 5 hits in Uniprot_trembl) |
E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana E-value=0; E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana E-value=7e-98; Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens E-value=6e-71; Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) E-value=1e-47; Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) E-value=1e-43; |
| Length |
1130 nt |
| Species |
Solanum lycopersicum |
| Belonged EST Libraries |
SL_TAMU_CALLUS (2 ESTs); SL_DEF_ROOT (1 ESTs); SRR015436 (1 ESTs); SRR015435 (1 ESTs); SL_Lyc_leaf (1 ESTs); SL_germ_seedlings_TAMU (1 ESTs); SL_cTOS (1 ESTs); |
| Sequence |
GCAAAAGAAAAAAATCCTGTCTTCATCATTCGAACAAAGCAAGGTGCCAATGTAAGCTAG
GTGGGTGTTAGTTGAGGATGCCGCCATTATTTAGGACCAGGCGCCAATAATTTCCAAGTT
GTATACACAAGTCCATTTGTCATGTAACTTATGACAAATCAAATGATCCTTGACCTTCAT
TGATAGCATAGAGCAACTTTTTGTACATTATATCCTTAGTAGAATAGGGAGGCAGTTTCA
GGTAGTTAGCACATGTCATCACACTAGGTAAATCATCGTCTGCAGATTCTGATGGCATAT
TACCATTTGGTGCTGTATTGCTAGCACTAGATGAATGCTTTCTCACTATTGTCAACTTAG
GATTGAGCACGGCCAGACCACCTGGAGGAAGCCGGGGAGCACCAGTCACAAACTGACAGA
ATGCTCGTTGCTGCTCAGGAGTGAACTCTCCCATGATCTCCAATAAATATACGATGGCGG
GACTCTTGGCTGTATATCCATGATCAAACTTGATATGATCTACAAGCGTCTCAGCCTTCC
ATAACTCTTTACGGCCACAAAGCAGGTAGTCCAACTCAGTAGAAGAGAATATTTGCAGAG
CTGAAATCTCAAAAACCTGATTGAATCCAGATCTAAATGCTTCCATCTGCCGCCCAATTC
CAGTCCTCACAGTGGCATCAACCACCAAAGTAACATATTCTTCCAAGTTACAGAGATCCA
CATTCTCATTGCCTGCTTTCAGAACATATTCAGGATAGCCTGGGAGTGTGAAATCTAAAC
AAAGATCCTCAACTGGGATCCCACGAAAATGCAGATCATTAATGTTCTCTTGGCCCTGGC
CTCCAATTGATTCTAGATTTTGTTTACGGCTAACAAGAGCTTGCAACTCTTGCAAAGTCT
TCCCTAACTCAGCATCAAAAGAAAGAATATCATACAGATCAAGCTCTTGGCCAAGAAGAA
GCTTGTAAAATGCAGTTGACAGAGGAAGATCCAATAGCCGCCCATCTTGAAGTGCTTTCG
CCATCACACGCCCTAGCAATCTGAAATATTCAATCACCTTCGGGAAGTGGTTGTCATCTG
CAGTTTCAACAGTTGATGACCAAGGGCGTGGGAATAATCCAAGAGGTGCT
|
| EST members of Unigene |
AW649832 SRR015436.193044 BP906485 SRR015435.100489 AW034732 BF097296 BI422937 BI203624
|
| InterProScan Domain |
|
| Gene Ontology |
|
| KEGG Orthology |
Genetic Information Processing > Folding, Sorting and Degradation > ko04120 Ubiquitin mediated proteolysis > K10590 E3 ubiquitin-protein ligase TRIP12 |
| EC |
6.3.2.19 |
| Transcription Factor Family |
|
| Transporter Classification Family |
8.A.3 Cytoplasmic membrane-periplasmic auxiliary-1 protein MPA1 plus a cytoplasmic domain MPA1-C or MPA1+C |
| Probeset |
|
| Corresponding NCBI Gene |
830017
|
| Trichome-related Gene from Literature |
830017
|