| Acc. |
TCSL78230 |
| Internal Acc. |
|
| Type |
TC/Unigene
|
| Annotation (Top 5 hits in Uniprot_trembl) |
E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana E-value=1e-79; E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana E-value=3e-60; Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens E-value=2e-43; Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) E-value=5e-39; Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) E-value=2e-35; |
| Length |
868 nt |
| Species |
Solanum lycopersicum |
| Belonged EST Libraries |
SL_cTOS (3 ESTs); SL_TAMU (2 ESTs); SL_maturing_fruit (1 ESTs); SL_DEF_ROOT (1 ESTs); |
| Sequence |
CCTGGCTATTCTGAATATATTCTTAAAGCAGGCGACGAGAATTAACTTGGAGGAGTATAT
TTCTTTGGTAGTTGATGCTACTGTGAAAACTGGAATCAGGCAGCAAATGGAGGCTTTTAG
ATCTGGCTTCAATCAGGTTTTCGACTTTTCAGCTCTGCAAATATTCTCTCCTTCAGAGTT
AGACTATCTATTATGTGGCCGTAGAGAGCTGTGGAAGCCTGAGACGCTAGTAGATCACAT
AAAATTCGATCATGGATTCACATCCAAGAGTCCTCCTATTATTCATTTACTAGAGATTAT
GGGAGAGTTCACACCTGAGCAGCAACGAGCATTCTGCCAGTTTGTTACTGGTGCTCCTCG
GCTCCCCGCAGGTGGTCTTGCTTCTCTGAATCCTAAGTTGACAATTGTGAGGAAGCATTC
ATCTAGTGCTGGCAATGCAGCACAGAACAGTAATGCCCCATCAGAATCTGCAGATGAAGA
CCTACCCAGTGTGATGACATGTGCTAATTACTTGAAACTCCCTCCCTATTCTACTAAGGA
GATCATGTCCAAGAAATTACTCTATGCCATTAATGAAGGTCAAGGATCGTTTGATTTGTC
ATAAGTCGGAGTAACTAATAGACTTGTTTATACAACTCGAGAATTGGTGCTTCTGATCCT
TGATAATGGTGCCGTCAAACCACCCTCTTCAAACTGACAATAGCAAGGTCTGTAAACACC
TTGTGGCATTGATAGATTATGTGTCTACTTGTTTCTGCTACCTTTATTATTTAATTACGA
TTGTTTCGTTAGTTTTCAGGTAAGTTATGTAGATTGCATATTGAGTATTTGTTTCTTGTC
TAATATATCAGATTTAGCTTGCTGTTTT
|
| EST members of Unigene |
BI208876 BI209271 AI488404 AI486666 BI211042 BF096925 BP892925
|
| InterProScan Domain |
|
| Gene Ontology |
|
| KEGG Orthology |
Genetic Information Processing > Folding, Sorting and Degradation > ko04120 Ubiquitin mediated proteolysis > K10590 E3 ubiquitin-protein ligase TRIP12 |
| EC |
6.3.2.19 |
| Transcription Factor Family |
|
| Transporter Classification Family |
8.A.3 Cytoplasmic membrane-periplasmic auxiliary-1 protein MPA1 plus a cytoplasmic domain MPA1-C or MPA1+C |
| Probeset |
|
| Corresponding NCBI Gene |
830017
|
| Trichome-related Gene from Literature |
830017
|