| Acc. |
TCMT52662 |
| Internal Acc. |
|
| Type |
TC/Unigene
|
| Annotation (Top 5 hits in Uniprot_trembl) |
Squalene synthase OS=Nicotiana benthamiana E-value=0; Squalene synthase OS=Arabidopsis thaliana E-value=0; Squalene synthase OS=Dictyostelium discoideum E-value=1e-93; Squalene synthase OS=Mus musculus E-value=6e-88; Squalene synthase OS=Rattus norvegicus E-value=2e-87; |
| Length |
2007 nt |
| Species |
Medicago truncatula |
| Belonged EST Libraries |
MT_JAS_ROOR (11 ESTs); MT_SEEDROOT_KV3 (5 ESTs); MtBB_NOD (5 ESTs); MT_INSECT (4 ESTs); MT_DROOT (3 ESTs); MtBA (3 ESTs); MT_DSTEM2 (2 ESTs); MT_ECELL (2 ESTs); MT_ROOTPHOS (2 ESTs); MT_SROOT_KV0 (1 ESTs); MT_GSEED (1 ESTs); MT_VILEAF (1 ESTs); MTFLOW (1 ESTs); MTAMP (1 ESTs); MT_Drought (1 ESTs); MHRP-root (1 ESTs); MT_CDS (1 ESTs); MT_GPOD (1 ESTs); MTUS_MIXTISSUE (1 ESTs); MtSNF (1 ESTs); MT_SROOT_KV2 (1 ESTs); |
| Sequence |
GAATTATAAAAAATGAATTCACATGACAAACCACACTTATAAAGCTACACAAAAAATGCT
CTTAACATTGAACTCAACCAAGTAAGCACTAGTATTTTTTTGAGTTAAATAAAATACAAG
GTGAGAGAGAGTGTATATGCGAATCTTCACATCTCAAACCAACTGTACGAACGAAATCCC
CCAACGACAAATACATACATAGAAGTTACCATCACCAATCTCCAAAATTATCACATTCAC
AAAAATTCATTATTTTCCCAATATTCAATTCAATTTCTCTTCATTGAACAAATTCCATTT
CCAGATAGAGAGAATAATCGCTTATTCGTAGAAACAAAAGATGGGAAGTATAAAAGCGAT
TTTGAAGAATCCAGATGATTTCTTTCCATTACTTAAGCTGAAAATCGCGGCCAGAAACGC
CGAGAAGCAGATCCCACCGGAACCGCATTGGGGATTCTGTTACTCTATGCTTCATAAGGT
TTCTAGAAGCTTCGGTCTTGTTATTCAGCAGCTTGGTCCTGAGCTTCGTGATGCTGTTTG
CATATTCTATTTGGTTCTTCGCGCTCTTGATACCGTTGAGGATGATACAAGCATAGAAAC
AGATGTCAAGGTTCCCATACTAATAGATTTTCATCGTCACATTTATGATAATGATTGGCA
CTTTGGGTGTGGCACGAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAAA
GGCTTTTCTGGAACTTGGAAAGAACTATCAGGATGCAATCGAGGACATTACGAAAAGAAT
GGGTGCTGGAATGGCGAAATTCATTTGCAAGGAGGTAGAAACAGTTGATGACTACGATGA
ATATTGTCACTATGTGGCTGGACTTGTTGGGCTGGGTTTATCAAAGCTTTTCTATGCCTC
TGGTAAAGAAGATCTGGCTACAGACAAACTTTCAAATTCAATGGGTTTGTTTCTTCAGAA
AACCAACATTATTCGAGATTATCTGGAAGACATCAATGAGATACCAAAGTCACGCATGTT
TTGGCCACGGCAGATCTGGAGTAAATATGTTAGCAAACTTGAGGACTTGAAATATGAGGA
AAACTCCGTTAAGGCTGTGCAATGCTTAAATGACATGGTCACTAATGCTTTGCTGCATGC
TGACGATTGCTTACAATACATGTCTGCATTACGAGACTCCTCTAATTTTCGCTTTTGTGC
TATTCCTCAGGTAATGGCAATTGGAACACTTGCAATGTGCTACAACAACATTGGTGTCTT
CAGAGGTGTAGTTAAAATGAGGCGAGGTCTAACTGCCAAAGTGATTGACCGAACCAAGAC
TATGGCTGATGTCTATGGTGCTTTCTTTGATTTTGCTTCCGTGTTGGAGTCCAAGGTTGA
CAAAAATGATCCAAATGCAACAAAAACATCGAGCAGGCTGGAAGCTATACAGAAAACTTG
CAGAGAATCTGGTCTCCTAACCAAAAGGAAATCTTACGTTTTGAGGAATGAGAGCGGATA
TGGCTCTACCATGATTCTCTTACTGGTCATCTTGTTTTCCATCATTTTTGCTTATCTCTC
TGCCAATCGTCACAATAACTAATCAACGGGTATTTTGGCCTTCGCAAGCATGGATAGCAA
CAGAACAGTGGTAGCATGGCCCACTCACGGAATGTGAATTTGCATGCATGGGAGCGATAT
TTGATGCGTGCATTTGAAAATTGTGTATTCTATTTGAATGAGTAGTAGATATAGATATAG
TTCCTAGTTTCCTACGTTGGGTTGAACTTTACCTCTACATTCACCCATAAAATTATGATT
GTTATGCGTGTTGTCAGTTATTTAAATGTTTTCCAAACGAGTGCTACGGAGATCAAAACT
CCCTCCTCCCCCTTCTTTGTCTAACCTTGGGTTTTATGCCATGATTGTTTACTGTTGCAT
TCTTGCATTTAGTTTAGTAGTTAGTTAAATAATCAAACTCCTAGAACTCTAACCAACTAA
TATCTATTCATGATTATCGTTTTTGCG
|
| EST members of Unigene |
AJ430610 CA922266 AL377614 AL375772 AL375771 AL374292 AL374291 BG448498 BE319563 AW686902 CX541739 AW690394 AW689603 BF649841 BF649265 AW329753 AW329472 AJ502010 BE240468 CB892023 BG645675 BG645486 BG644807 AW774681 BI309713 AJ845717 AW299146 BE204309 CX521135 CX534996 CX534873 CX534144 CX533896 CX532049 CX531793 CX531343 CX530846 CX530684 CX529653 CX529271 AJ496819 AL370783 AL367955 AL367954 BF633502 BG449579 BF642446 BF642230 BF641455
|
| InterProScan Domain |
|
| Gene Ontology |
|
| KEGG Orthology |
Metabolism > Biosynthesis of Secondary Metabolites > ko00900 Terpenoid biosynthesis > K00801 farnesyl-diphosphate farnesyltransferase;
Metabolism > Lipid Metabolism > ko00100 Biosynthesis of steroids > K00801 farnesyl-diphosphate farnesyltransferase |
| EC |
2.5.1.21 |
| Transcription Factor Family |
|
| Transporter Classification Family |
|
| Probeset |
Mtr.43079.1.S1_at
|
| Corresponding NCBI Gene |
829616
|
| Trichome-related Gene from Literature |
N/A
|